| Reaction | 1_toggle.xml | 2_repressilator.xml |
| Reaction1 | kd_mRNA * X | kd_mRNA * X |
| Reaction10 | a0_tr + (a_tr * (KM ^ n )) / (KM ^ n + PY ^ n ) | a0_tr + (a_tr * (KM ^ n )) / (KM ^ n + PZ ^ n ) |
| Reaction11 | a0_tr + (a_tr * (KM ^ n )) / (KM ^ n + PX ^ n ) | a0_tr + (a_tr * (KM ^ n )) / (KM ^ n + PX ^ n ) |
| Reaction12 | - | a0_tr + (a_tr * (KM ^ n )) / (KM ^ n + PY ^ n ) |
| Reaction2 | kd_mRNA * Y | kd_mRNA * Y |
| Reaction3 | - | kd_mRNA * Z |
| Reaction4 | k_tl * X | k_tl * X |
| Reaction5 | k_tl * Y | k_tl * Y |
| Reaction6 | - | k_tl * Z |
| Reaction7 | kd_prot * PX | kd_prot * PX |
| Reaction8 | kd_prot * PY | kd_prot * PY |
| Reaction9 | - | kd_prot * PZ |